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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22531525_22532530_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22531525 - 22532530
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATGCTTTAAAT
Flanking Amino Acid:
AVQAVGVMSFAFICHHNSFL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
1
69.7
45.4
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
69.7
0.69
1.5
82.33
38.9

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016748
22527390 - 22543839
16450