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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22532602_22539958_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22532602 - 22539958
Intron Length:
7357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
AATTCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATCTATTAAAT
Flanking Amino Acid:
MVRTVTLGPQVPKSENAWIF
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.4
0.53
0.9
70.5
40.3
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
54.4
0.22
1.7
71.91
37.8

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016748
22527390 - 22543839
16450