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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22540039_22540578_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22540039 - 22540578
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ACTGACTGAAGT
Flanking Amino Acid:
LYHDIAKLGKVSLISLILTI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
82
0.72
0.9
75.5
38.4
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
46.5
-0.1
2
64.02
45.9

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016748
22527390 - 22543839
16450