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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22543800_22544991_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22543800 - 22544991
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
LLLFGVAYITDYSIILLIKG
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043951
22543502 - 22547238
3737