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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22545067_22545461_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22545067 - 22545461
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATATTTGTAAAT
Flanking Amino Acid:
INSIIGSGIIGLPYSMKEAG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
49.7
0.06
2
71.8
39.2

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043951
22543502 - 22547238
3737