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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22545580_22547193_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22545580 - 22547193
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCATATTTAATT
Flanking Amino Acid:
PELPAAAAPQIETDDQTALV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.8
0.45
1
66
38.8
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
66.7
0.6
1.4
77.42
39.4

Associated Gene:

Gene:
SLC38A11
Ensembl Gene ID:
ENSAPLG00000016061
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043951
22543502 - 22547238
3737