Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_225562_226084_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

225562 - 226084

Intron Length:

523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TTTTGAGTAACA

Flanking Amino Acid:

PLPSHMIQKTRKRKYFHRDQ

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

71.6

0.54

33.1

Major PPT

72.8

0.51

1.1

71.5

43.2

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

49.3

-0

2.6

76.36

40.9

Associated Gene:

Gene:

CLK1

Ensembl Gene ID:

ENSAPLG00000016010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016728

217151 - 226484

9334