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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22584784_22585527_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22584784 - 22585527
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTAAAGTAGCT
Flanking Amino Acid:
DFVVVILSIVGMFLAEMIEK
Intron Amino Acid Position:
1615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.6
0.8
0.6
78.7
30.2
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
42.7
-0.4
2.5
71.32
44.8

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705