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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22585799_22586826_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22585799 - 22586826
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGTATAAGAAGT
Flanking Amino Acid:
KPQKPIPRPVNKFQGMVFDF
Intron Amino Acid Position:
1525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
38.4
-0.8
2
55.13
39.8

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705