About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22588793_22590174_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22588793 - 22590174
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATCCCTTGATT
Flanking Amino Acid:
IMYAAVDSRDVEDQPKYEDN
Intron Amino Acid Position:
1444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.5
0.57
0.9
70.2
40.4
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
70.7
0.73
1.2
78.66
37.2

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705