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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22592425_22594481_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22592425 - 22594481
Intron Length:
2057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATAA
5'SS Class:
major
3'SS Sequence:
ATTTTTATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAACT
Flanking Amino Acid:
RALSRFEGMRVVVNALVGAI
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
70
32.2
Major BPS
100
1.24
0.5
100
0
Major PPT
72.5
0.51
1
67.5
43
Minor 5ss
31.4
-2.1
3
29.9
43.1
Minor BPS
71.4
0.75
1.9
93.33
34.8

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705