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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22594605_22599494_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22594605 - 22599494
Intron Length:
4890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
WCWLDFLIVDVSLVSLIANA
Intron Amino Acid Position:
1291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.8
80.5
36.4
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705