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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22599669_22600698_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22599669 - 22600698
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
FMILLSSGALAFEDIYIEQR
Intron Amino Acid Position:
1233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705