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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2260715_2269670_R

Intron Information:

Intron Rank:
141740
Intron Class:
major
Intron Phase:
Intron Coordinates:
2260715 - 2269670
Intron Length:
8956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTCTA
5'SS Class:
major
3'SS Sequence:
TATTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
71.8
39.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
40.2
-1.1
2.7
50.6
45.7
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023619
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028779
2260681 - 2339564
78884