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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22620131_22622816_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22620131 - 22622816
Intron Length:
2686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTTACA
Flanking Amino Acid:
TSPTGQLLPEGTTTETEIRK
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84
0.76
0.8
77.4
35.3
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
64.9
0.46
1.9
79.34
35.9

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705