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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22623165_22627214_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22623165 - 22627214
Intron Length:
4050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAGC
5'SS Class:
major
3'SS Sequence:
AAATCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
YEKRFTSPHQSLLSIRGSLF
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
61.3
43.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.9
70
40.2
Minor 5ss
30.9
-2.2
3.4
43.1
44.1
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705