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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22629537_22629674_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22629537 - 22629674
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTGGTTTAATA
Flanking Amino Acid:
QDFWENLYQLTLRAAGKTYM
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.4
0.68
0.8
74.1
36.3
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
55.7
0.18
1.9
67.25
40.1

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705