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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22630729_22631028_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22630729 - 22631028
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATTTCTAATG
Flanking Amino Acid:
FNWKDYIEDETHFYILEGQR
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.1
0.54
0.9
68.7
36.3
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
52
-0
1.7
58.67
37.4

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705