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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22632285_22632983_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22632285 - 22632983
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TCCCCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TGTGTGTGAACT
Flanking Amino Acid:
NWLDFSVILMAYVTEFVDLG
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
67.1
44.6
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
78.5
0.64
0.8
72.1
31
Minor 5ss
35.3
-1.7
3.3
44.7
43.5
Minor BPS
48.6
-0
2.2
72.98
43.9

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705