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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22634728_22635639_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
22634728 - 22635639
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TTC|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
GACTATAATCTAC|G
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
RKIAIKILVHSLFSMLIMCT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
29.1
-1.3
3.4
45.9
44.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
35.5
-0.8
3.1
40.8
42.6
Minor 5ss
97.1
1.57
0.7
90.7
20.5
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705