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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22635759_22637978_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22635759 - 22637978
Intron Length:
2220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTATTTTAATT
Flanking Amino Acid:
DLDPYYINKKTFIVLNKGKA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
70.3
0.71
1.2
80.77
35.1

Associated Gene:

Gene:
SCN3A
Ensembl Gene ID:
ENSAPLG00000012021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012544
22583591 - 22638295
54705