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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2269747_2338432_R

Intron Information:

Intron Rank:
141741
Intron Class:
major
Intron Phase:
Intron Coordinates:
2269747 - 2338432
Intron Length:
68686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
GATTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAG
U12 Branch Point Sequence:
TAAGCCTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
48.9
-0
1.5
56.1
37.3
Major PPT
73.1
0.52
0.9
65.9
35.7
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
50.7
0
1.9
61.8
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023619
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028779
2260681 - 2339564
78884