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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22697491_22701393_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22697491 - 22701393
Intron Length:
3903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
FNWDEYIEDRNHFYFLEGQN
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
78.3
36.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
38.8
-1.3
3.1
50
40.3
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277