About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22701458_22702036_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22701458 - 22702036
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TAGTTGTTAAAA
Flanking Amino Acid:
ALLCGNSSDAGQCPEGYICV
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
87.8
0.85
0.6
84.4
23.4
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
51.2
0.03
2.1
65.23
41.1

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277