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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22710652_22711553_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22710652 - 22711553

Intron Length:

902

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

ATTTTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTTCGTTAAAAT

Flanking Amino Acid:

FSGVLSVGNLVFTGIFTAEM

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

1.1

76.5

38.6

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

87.5

0.84

0.7

81.9

29.3

Minor 5ss

42.7

-0.8

3.1

65.3

39.9

Minor BPS

48.6

-0

2.1

74.3

42.6

Associated Gene:

Gene:

SCN2A

Ensembl Gene ID:

ENSAPLG00000014616

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015276

22695423 - 22742699

47277