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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22711728_22713213_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22711728 - 22713213
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
ACACGAATAACT
Flanking Amino Acid:
GLSVLRSFRLLRVFKLAKSW
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
42.5
-0.4
2.1
59.27
43.1

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277