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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22715247_22725331_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22715247 - 22725331
Intron Length:
10085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTCACA
Flanking Amino Acid:
SESDLEESKEKLNASSSSEG
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.7
40.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.1
0.66
0.9
72.8
36.5
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
61.9
0.37
2
77.59
38.9

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277