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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22725968_22727024_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22725968 - 22727024
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATATCA
5'SS Class:
major
3'SS Sequence:
ATCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATCCTCAAAA
Flanking Amino Acid:
FMILLSSGALAFEDIYIEQR
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66
33.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.3
0.77
0.8
79.6
31.8
Minor 5ss
38.4
-1.3
3
45.9
44.1
Minor BPS
64.2
0.44
1.6
73.02
37.9

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277