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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22727199_22729294_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22727199 - 22729294
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TGAGCACTATTG
Flanking Amino Acid:
WCWLDFLIVDVSLVSLTANA
Intron Amino Acid Position:
1035

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
80.1
0.68
0.9
77.2
37.1
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
39
-0.9
2.1
42.99
42.1

Associated Gene:

Gene:
SCN2A
Ensembl Gene ID:
ENSAPLG00000014616
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015276
22695423 - 22742699
47277