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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22827116_22831260_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22827116 - 22831260
Intron Length:
4145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GCATCTGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAATG
Flanking Amino Acid:
MSSSSILKREKR
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71
0.47
1
61.2
44.4
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
69.9
0.49
1.6
73.75
38.5

Associated Gene:

Gene:
CSRNP3
Ensembl Gene ID:
ENSAPLG00000014467
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033832
22817161 - 22839386
22226