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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22831521_22836546_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22831521 - 22836546
Intron Length:
5026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTCTGTGTAACA
Flanking Amino Acid:
EEKLNSLKLKMTKNGTVESE
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.4
0.53
1
68.9
40.8
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
49.8
-0
2.4
70.26
42.8

Associated Gene:

Gene:
CSRNP3
Ensembl Gene ID:
ENSAPLG00000014467
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024531
22775790 - 22839801
64012
ENSAPLT00000015073
22814889 - 22839386
24498
ENSAPLT00000040016
22770389 - 22839386
68998
ENSAPLT00000033832
22817161 - 22839386
22226