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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22836844_22838345_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22836844 - 22838345
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTTTTTTAAAA
Flanking Amino Acid:
TCSLAGIKCQVDRMSFPCGC
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.4
0.57
1.1
79
31.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
70.6
0.64
1.3
75.65
35.9

Associated Gene:

Gene:
CSRNP3
Ensembl Gene ID:
ENSAPLG00000014467
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015073
22814889 - 22839386
24498
ENSAPLT00000040016
22770389 - 22839386
68998
ENSAPLT00000033832
22817161 - 22839386
22226
ENSAPLT00000024531
22775790 - 22839801
64012