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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22853881_22854346_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22853881 - 22854346
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCACCCACATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCTTTCTCACCC
Flanking Amino Acid:
LREEQWQHQKDQTLYSEALH
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
58.8
0.2
0.9
57
33
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
49.8
-0
1.9
61.43
44.4

Associated Gene:

Gene:
GALNT3
Ensembl Gene ID:
ENSAPLG00000013748
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014342
22853758 - 22864668
10911