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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22880972_22881932_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22880972 - 22881932
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATCTTGAATG
Flanking Amino Acid:
LLKRCLRHNRSCCKAYEYMG
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
81
36
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
56.6
0.07
1.5
56.94
38.5

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949