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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22885783_22886410_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22885783 - 22886410
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATTTTTGTATTT
Flanking Amino Acid:
HFQQLLERKPDNYATLSRLI
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
48.4
-0
2.1
72.97
39.1

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949