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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22892630_22894401_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22892630 - 22894401
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTCTAAATAATT
Flanking Amino Acid:
ALTKTHNYSKAISYYEAALR
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.5
0.84
0.7
85.4
29.3
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
46.7
-0.1
2
66.94
43.7

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949