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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22894513_22895478_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22894513 - 22895478
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTCACT
Flanking Amino Acid:
LGDAYMNIQEPDEAIEVYEQ
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.3
34.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.2
0.5
1
73
30.7
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
72.5
0.79
1.7
88.57
36.5

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949