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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22895552_22895841_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22895552 - 22895841
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTGTTAAATACT
Flanking Amino Acid:
RDKKLYAGCYRDLVEKLPSA
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
81.9
32.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
42
-0.9
3.5
64.1
47.4
Minor BPS
41.2
-0.6
2.3
65.52
44.7

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949