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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22897039_22897698_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22897039 - 22897698
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTATTT
Flanking Amino Acid:
LELCLSYNFEVREHPVYYLI
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94
1.04
0.8
78.8
38.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
39.6
-1.2
2.8
49.7
46.6
Minor BPS
52.7
0.16
1.9
73.79
43.2

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949