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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22897857_22898322_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22897857 - 22898322
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTC
5'SS Class:
major
3'SS Sequence:
TTTGACTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTGACT
Flanking Amino Acid:
FLIAKVKYLTGDIEAAYNNL
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
69.9
41.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.1
0.54
0.9
66.2
40.5
Minor 5ss
42.1
-0.9
3.2
59.9
44.7
Minor BPS
82
1.09
0.9
94.3
25.7

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949