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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22898453_22899951_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22898453 - 22899951
Intron Length:
1499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCTTTTACT
Flanking Amino Acid:
REYLNFCPAQPACHGQSPSS
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
74.4
35.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
80.4
1.04
1.5
96.11
29.5

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949