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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22908100_22909647_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22908100 - 22909647
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTTTTTTACA
Flanking Amino Acid:
MIKVSNGDKEGLILKAWLDL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
86.4
0.82
0.8
80.6
36
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
61.3
0.35
1.6
70.12
36.2

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949