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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22911218_22912199_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22911218 - 22912199
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGG
5'SS Class:
major
3'SS Sequence:
TTGTTTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
GATGTTATAACC
Flanking Amino Acid:
FYRAYGDLRTGDIQEGIRQL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
55.2
49
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
77.7
0.62
0.9
79
34.3
Minor 5ss
35.7
-1.6
3.3
47.7
47.8
Minor BPS
49.8
-0
1.7
60.62
38.5

Associated Gene:

Gene:
TTC21B
Ensembl Gene ID:
ENSAPLG00000012826
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013419
22878596 - 22912544
33949