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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22921758_22922816_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22921758 - 22922816
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAATTA
5'SS Class:
major
3'SS Sequence:
CTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTGAATT
Flanking Amino Acid:
KPQKPIPRPGNKFQGMVFDF
Intron Amino Acid Position:
1440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.1
35.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.6
84.8
22.9
Minor 5ss
40.4
-1.1
3.2
47.5
48
Minor BPS
60.2
0.4
1.6
77.61
39.1

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000039202
22919956 - 22988983
69028
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000018532
22919956 - 22988983
69028