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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22930613_22931013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22930613 - 22931013

Intron Length:

401

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATTTTATTT

Flanking Amino Acid:

IMYAAIDSRDVLQQPKYEDN

Intron Amino Acid Position:

1360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.5

28.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.3

0.88

0.6

88.8

20.5

Minor 5ss

40.8

-1

2.8

57.5

39.6

Minor BPS

61.8

0.45

1.6

79.69

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000018532

22919956 - 22988983

69028