About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22931068_22937398_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22931068 - 22937398
Intron Length:
6331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTACTGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATGCCTAAATA
Flanking Amino Acid:
GFGYLSLLQVATFKGWMDIM
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
79.5
29.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.1
0.48
1
64.2
41.3
Minor 5ss
43.7
-0.7
2.9
59.8
40
Minor BPS
62.4
0.38
1.8
72.14
40.4

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018532
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000039202
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028