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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22931068_22949823_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22931068 - 22949823

Intron Length:

18756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

GTACTGTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

TATGCCTAAATA

Flanking Amino Acid:

RALSRFEGMRATFKGWMDIM

Intron Amino Acid Position:

1342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

76.9

33.7

Major BPS

82.2

0.8

71.9

35.8

Major PPT

71.1

0.48

64.2

41.3

Minor 5ss

32.3

-2

2.9

32.2

42.1

Minor BPS

62.4

0.38

1.8

72.14

40.4

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016174

22919956 - 22988983

69028