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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22937681_22949823_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22937681 - 22949823

Intron Length:

12143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGTGTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

TATTTGTGTACT

Flanking Amino Acid:

RALSRFEGMRVVVNALLGAI

Intron Amino Acid Position:

1329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

76.9

33.7

Major BPS

69.2

0.48

37.1

Major PPT

66.7

0.38

59.8

45.4

Minor 5ss

32.3

-2

2.9

32.2

42.1

Minor BPS

46.7

-0.1

2.4

73.44

43.4

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018532

22919956 - 22988983

69028

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028