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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22951215_22953691_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22951215 - 22953691

Intron Length:

2477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTCTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACAAAA

U12 Branch Point Sequence:

TTTTTCTCATAG

Flanking Amino Acid:

FMILLSSGALAFEDIYIEQR

Intron Amino Acid Position:

1243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.8

81.1

26.8

Major BPS

51.5

0.04

0.9

57.3

24.9

Major PPT

81.1

0.7

0.8

76.8

Minor 5ss

29.7

-2.3

2.6

30.1

36.9

Minor BPS

50.1

-0.1

64.63

43.1

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000018532

22919956 - 22988983

69028