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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22958983_22959748_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22958983 - 22959748
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
MMVMVIGNLVVLNLFLALLL
Intron Amino Acid Position:
991

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.9
34.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.6
0.89
0.7
85.3
29.1
Minor 5ss
36.5
-1.5
3
47.5
43.4
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018532
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000039202
22919956 - 22988983
69028
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028